Difference between revisions of "PolA"

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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29090&redirect=T BSU29090]
  
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
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=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU29090&redirect=T BSU29090]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1XWL 1XWL] (large fragment, corresponds to AA 310 to 880, Geobacillus stearothermophilus)
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1XWL 1XWL] (large fragment, corresponds to AA 310 to 880, Geobacillus stearothermophilus)

Revision as of 14:29, 2 April 2014

  • Description: DNA polymerase I, required for repair of UV- or MMS-induced DNA damage

Gene name polA
Synonyms
Essential no
Product DNA polymerase I
Function DNA replication
Gene expression levels in SubtiExpress: polA
MW, pI 98 kDa, 4.916
Gene length, protein length 2640 bp, 880 aa
Immediate neighbours mutM, phoR
Sequences Protein DNA DNA_with_flanks
Genetic context
PolA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PolA expression.png
























Categories containing this gene/protein

DNA repair/ recombination

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU29090

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: has DNA polymerase and 5'-3' exonuclease activity, but no 3'-5' exonuclease activity PubMed
  • Protein family: DNA polymerase type-A family (according to Swiss-Prot)
  • Paralogous protein(s): YpcP, one of the two proteins has to be present for viability PubMed

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1XWL (large fragment, corresponds to AA 310 to 880, Geobacillus stearothermophilus)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References