yodR

168

similar to butyrate-acetoacetate CoA-transferase

Locus: BSU_19720

Molecular weight: 23.19 kDa

Isoelectric point: 6.11

Protein length: 217 aa

Gene length: 654 bp

Function: unknown

Product: unknown

Essential: no

E.C.: 2.8.3.9

Synonyms: yodR

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG2057 (Galperin et al., 2021)

Gene

Coordinates: 2,143,022  2,143,675

The protein

Protein family

• 3-oxoacid CoA-transferase subunit B family (with ScoB, according to UniProt)

Structure

• 3CDK (PDB) (the ScoA-ScoB complex) (51% identity)
• O34466 (AlphaFold)

Paralogous protein(s)

• ScoB

Expression and Regulation

Operons

• Genes: yodT-yodS-yodR-yodQ-yodP-kamA-yokU-yozE

  Description: PubMed

  Regulation

  • expressed early during sporuation in the mother cell (SigE) PubMed

  Sigma factors

  • SigE: sigma factor, PubMed, in sigE regulon

Biological materials

Mutant

• MGNA-B506 (yodR::erm), available at the NBRP B. subtilis, Japan
• BKE19720 (yodR::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TTTTGCAATCTGTTCTCTTT,  downstream forward: _UP4_ATGCCTTTTTCTTAAGAGGG
• BKK19720 (yodR::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_TTTTGCAATCTGTTCTCTTT,  downstream forward: _UP4_ATGCCTTTTTCTTAAGAGGG

References

Loading