Difference between revisions of "FadG"
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|style="background:#ABCDEF;" align="center"|'''Function''' || fatty acid degradation | |style="background:#ABCDEF;" align="center"|'''Function''' || fatty acid degradation | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| ''' | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14071 fadG] |
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| − | |style="background:# | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=fadG fadG]''' |
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| − | |style="background:#ABCDEF;" align="center"| ''' | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 64 kDa, 8.556 |
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| − | |style="background:#ABCDEF;" align="center"|''' | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1728 bp, 576 aa |
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| − | | | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fadH]]'', ''[[ykzU]]'' |
| + | |- | ||
| + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU14071 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU14071 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU14071 DNA_with_flanks] | ||
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|colspan="2" | '''Genetic context''' <br/> [[Image:ykuG_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ykuG_context.gif]] | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
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| + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=fadG_1479137_1480867_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:fadG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU14071]] | ||
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|} | |} | ||
__TOC__ | __TOC__ | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
| + | <br/><br/><br/><br/> | ||
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<br/><br/><br/><br/><br/><br/><br/><br/> | <br/><br/><br/><br/><br/><br/><br/><br/> | ||
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| + | = [[Categories]] containing this gene/protein = | ||
| + | {{SubtiWiki category|[[utilization of lipids]]}} | ||
| + | |||
| + | = This gene is a member of the following [[regulons]] = | ||
| + | {{SubtiWiki regulon|[[FadR regulon]]}} | ||
=The gene= | =The gene= | ||
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=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU14071&redirect=T BSU14071] | ||
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ykuFG.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ykuFG.html] | ||
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=== Additional information=== | === Additional information=== | ||
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* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
| + | * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU14071&redirect=T BSU14071] | ||
* '''Structure:''' | * '''Structure:''' | ||
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* '''Operon:''' ''[[fadH]]-[[fadG]]'' {{PubMed|17189250}} | * '''Operon:''' ''[[fadH]]-[[fadG]]'' {{PubMed|17189250}} | ||
| − | * '''[ | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=fadG_1479137_1480867_1 fadG] {{PubMed|22383849}} |
| + | |||
| + | * '''Sigma factor:''' | ||
* '''Regulation:''' | * '''Regulation:''' | ||
Latest revision as of 13:34, 2 April 2014
- Description: fatty acid degradation
| Gene name | fadG |
| Synonyms | ykuG |
| Essential | no |
| Product | unknown |
| Function | fatty acid degradation |
| Gene expression levels in SubtiExpress: fadG | |
| Metabolic function and regulation of this protein in SubtiPathways: fadG | |
| MW, pI | 64 kDa, 8.556 |
| Gene length, protein length | 1728 bp, 576 aa |
| Immediate neighbours | fadH, ykzU |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU14071
Phenotypes of a mutant
Database entries
- BsubCyc: BSU14071
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: fadG family (according to Swiss-Prot)
- Paralogous protein(s): YbfG
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- BsubCyc: BSU14071
- Structure:
- UniProt: C0H407
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Hiroshi Matsuoka, Kazutake Hirooka, Yasutaro Fujita
Organization and function of the YsiA regulon of Bacillus subtilis involved in fatty acid degradation.
J Biol Chem: 2007, 282(8);5180-94
[PubMed:17189250]
[WorldCat.org]
[DOI]
(P p)
