xkdP

168

PBSX prophage

Locus: BSU_12690

Molecular weight: 27.02 kDa

Isoelectric point: 10.52

Protein length: 219 aa

Gene length: 660 bp

Function: unknown

Product: unknown

Essential: no

E.C.: null

Synonyms: xkdP

Genomic Context

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Categories containing this gene/protein

Prophages and mobile genetic elements, Prophages, PBSX prophage

List of homologs in different organisms, belongs to COG1652 (Galperin et al., 2021)

Gene

Coordinates: 1,338,957 → 1,339,616

The protein

Domains

contains a N-acetylglucosamine-polymer-binding LysM domain at the C-terminus PubMed
LysM domain (aa 159-217) (according to UniProt)

Structure

P54335 (AlphaFold)

Expression and Regulation

Operons

Genes: xtmA-xtmB-xkdE-xkdF-xkdG-xkdH-xkdI-xkdJ-xkdK-xkdM-xkdN-xkzB-xkdO-xkdP-xkdQ-xkdR-xkdS-xkdT-xkdU-xkzA-xkdV-xkdW-xkdX-xepA-xhlA-xhlB-xlyA

Description: PubMed

Regulation

expression during spore germination is strongly reduced under conditions of osmotic stress PubMed

Sigma factors

Xpf: sigma factor, PubMed, in xpf regulon

Biological materials

Mutant

BKE12690 (ΔxkdP::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_ATTTAGTCAAATGCAACGAC,  downstream forward: _UP4_CCGCAATGAAACAGGTGATG
BKK12690 (ΔxkdP::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_ATTTAGTCAAATGCAACGAC,  downstream forward: _UP4_CCGCAATGAAACAGGTGATG

References

Reviews

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