ydgJ

168

similar to transcriptional regulator ([wiki|MarR family])

locus: BSU_05670

Molecular weight: 18.66 kDa

pI: 9.35

Protein length: 164 aa

Gene length: 495 bp

function: unknown

product: unknown

essential: no

synonyms: ydgJ

List of homologs in different organisms, belongs to COG1846 (Galperin et al., 2021)

Gene

Coordinates: 612,836 → 613,330

The protein

Protein family

• [wiki|MarR family]

[wiki|Domains]

• [wiki|HTH marR-type domain] (aa 28-157) (according to UniProt)

Structure

• [PDB|3BDD] (MarR from Streptococcus suis, corresponds to aa 27 ... 134, 37% identity)
• [AF|P96708]

Expression and Regulation

Operons

• genes: [gene|E8D1416DB588A4D72E84341F5EAB845E77A84792|ydgJ]-[gene|8EE3F368AB1CD4BB14E42135D63D27138D3FED03|ydgI]

  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C162 (ydgJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2160 NBRP B. subtilis, Japan]
• BKE05670 (Δ[gene|E8D1416DB588A4D72E84341F5EAB845E77A84792|ydgJ]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05670 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATTAATATACAACGATTG,  downstream forward: _UP4_GAAGCTTAAGAGGAGTGTAT
• BKK05670 (Δ[gene|E8D1416DB588A4D72E84341F5EAB845E77A84792|ydgJ]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05670 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATTAATATACAACGATTG,  downstream forward: _UP4_GAAGCTTAAGAGGAGTGTAT