ydeP

168

MarR/DUF24 family transcription regulator

Locus: BSU_05290

Molecular weight: 15.07 kDa

Isoelectric point: 9.4

Protein length: 128 aa

Gene length: 387 bp

Function: unknown

Product: MarR/DUF24 family transcription regulator

Essential: no

Synonyms: ydeP

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG1733 (Galperin et al., 2021)

Gene

Coordinates: 575,712  576,098

The protein

Protein family

• MarR/DUF24 family

Domains

• HTH hxlR-type domain (aa 18-116) (according to UniProt)

Structure

• 4A5M (PDB) (HypR, 71% identity) PubMed
• P96673 (AlphaFold)

Paralogous protein(s)

• YodB, HypR, YkvN, HxlR, YdzF, YtcD

Expression and Regulation

Operons

• Genes: ydeP

  Description: PubMed

Biological materials

Mutant

• MGNA-C167 (ydeP::erm), available at the NBRP B. subtilis, Japan
• BKE05290 (ydeP::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA,  downstream forward: _UP4_TAATAACCAGAAAAAATACC
• BKK05290 (ydeP::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CAAGCTGTTCACTCCTAATA,  downstream forward: _UP4_TAATAACCAGAAAAAATACC

References

Research papers

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