ydbO

168

similar to cation efflux system

Locus: BSU_04540

Molecular weight: 31.33 kDa

Isoelectric point: 6.23

Protein length: 290 aa

Gene length: 873 bp

Function: unknown

Product: unknown

Essential: no

Synonyms: ydbO

Genomic Context

Hide small RNAsZoom:

List of homologs in different organisms, belongs to COG0053 (Galperin et al., 2021)

Gene

Coordinates: 506,866 → 507,738

The protein

Protein family

• Cation diffusion facilitator (CDF) transporter (TC 2.A.4) family (according to UniProt)

Structure

• 5VRF (PDB) (from Shewanella oneidensis, 26% identity) PubMed
• P96610 (AlphaFold)

Paralogous protein(s)

• MneS, MneP

Localization

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• Genes: ydbO

  Description: PubMed

Biological materials

Mutant

• MGNA-C120 (ydbO::erm), available at the NBRP B. subtilis, Japan
• BKE04540 (ΔydbO::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTGAATACCAGCCTCCAT,  downstream forward: _UP4_ATAAAATAAGGCTGTTTAAC
• BKK04540 (ΔydbO::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATTGAATACCAGCCTCCAT,  downstream forward: _UP4_ATAAAATAAGGCTGTTTAAC

References

Research papers

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