Difference between revisions of "YbfK"

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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
* '''Domains:'''  
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* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
* '''Cofactor(s):'''
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* '''[[Cofactors]]:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
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=== Database entries ===
 
=== Database entries ===
  
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2R11 2R11] (the structure of [[Nap]], 60% identity, 87% similarity)
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* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=4CCY 4CCY] {{PubMed|24418394}}
  
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31452 O31452]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31452 O31452]
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybfK_246658_247548_1 ybfK] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ybfK_246658_247548_1 ybfK] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
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* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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=References=
 
=References=
  
<pubmed>,11389736, </pubmed>
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<pubmed>,11389736, 24418394 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 08:54, 16 January 2014

  • Description: carboxylesterase NP

Gene name ybfK
Synonyms cesB
Essential no
Product carboxylesterase NP
Function degradation of isoprenoid-containing lipids
Gene expression levels in SubtiExpress: ybfK
MW, pI 32 kDa, 5.135
Gene length, protein length 888 bp, 296 aa
Immediate neighbours ybfJ, pssA
Sequences Protein DNA DNA_with_flanks
Genetic context
YbfK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YbfK expression.png















Categories containing this gene/protein

utilization of lipids

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU02260

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: A carboxylic ester + H2O = an alcohol + a carboxylate (according to Swiss-Prot)
  • Protein family: AB hydrolase superfamily (according to Swiss-Prot)
  • Paralogous protein(s): Nap

Extended information on the protein

  • Kinetic information:
  • Modification:

Database entries

  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References