Difference between revisions of "YncD"
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' yncD (according to [http://dbtbs.hgc.jp/COG/prom/yncD.html DBTBS]) | + | * '''Operon:''' ''yncD'' (according to [http://dbtbs.hgc.jp/COG/prom/yncD.html DBTBS]) |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=alrB_1897941_1899125_-1 yncD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=alrB_1897941_1899125_-1 yncD] {{PubMed|22383849}} | ||
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=References= | =References= | ||
| − | + | == Reviews == | |
| + | <pubmed>23202530</pubmed> | ||
| + | == Original publications == | ||
<pubmed>18399999,15699190,14523133, 22171814</pubmed> | <pubmed>18399999,15699190,14523133, 22171814</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 19:06, 4 January 2014
- Description: spore coat alanine racemase
| Gene name | yncD |
| Synonyms | alrB |
| Essential | no |
| Product | spore coat alanine racemase |
| Function | protection of the spore |
| Gene expression levels in SubtiExpress: yncD | |
| Metabolic function and regulation of this protein in SubtiPathways: Alternative nitrogen sources | |
| MW, pI | 43 kDa, 9.593 |
| Gene length, protein length | 1182 bp, 394 aa |
| Immediate neighbours | yncC, yncE |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sporulation proteins, poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU17640
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: L-alanine = D-alanine (according to Swiss-Prot)
- Protein family: alanine racemase family (according to Swiss-Prot)
- Paralogous protein(s): Alr
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P94494
- KEGG entry: [3]
- E.C. number: 5.1.1.1
Additional information
Expression and regulation
- Operon: yncD (according to DBTBS)
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Peter T McKenney, Adam Driks, Patrick Eichenberger
The Bacillus subtilis endospore: assembly and functions of the multilayered coat.
Nat Rev Microbiol: 2013, 11(1);33-44
[PubMed:23202530]
[WorldCat.org]
[DOI]
(I p)
Original publications
Peter T McKenney, Patrick Eichenberger
Dynamics of spore coat morphogenesis in Bacillus subtilis.
Mol Microbiol: 2012, 83(2);245-60
[PubMed:22171814]
[WorldCat.org]
[DOI]
(I p)
Kara J Pierce, Samson P Salifu, Martin Tangney
Gene cloning and characterization of a second alanine racemase from Bacillus subtilis encoded by yncD.
FEMS Microbiol Lett: 2008, 283(1);69-74
[PubMed:18399999]
[WorldCat.org]
[DOI]
(P p)
Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190]
[WorldCat.org]
[DOI]
(P p)
Andrea Feucht, Louise Evans, Jeff Errington
Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis.
Microbiology (Reading): 2003, 149(Pt 10);3023-3034
[PubMed:14523133]
[WorldCat.org]
[DOI]
(P p)
