Difference between revisions of "YdaO"
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
| − | * ''' | + | * '''[[Cofactors]]:''' |
* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| Line 107: | Line 107: | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaO_486432_488255_1 ydaO] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ydaO_486432_488255_1 ydaO] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
| − | * '''Regulation:''' | + | * '''Regulation:''' |
| − | |||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | ** expression is controlled via termination antitermination by the [[ydaO riboswitch]] {{PubMed| | + | ** expression is controlled via termination antitermination by the [[ydaO riboswitch]], expression is switched off upon binding od c-di-AMP {{PubMed|24141192,20511502}} |
* '''Additional information:''' | * '''Additional information:''' | ||
| Line 139: | Line 138: | ||
=References= | =References= | ||
| − | <pubmed>15096624,20511502, 23086297 </pubmed> | + | <pubmed>15096624,20511502, 23086297 24141192</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 17:08, 14 December 2013
- Description: putative transporter
| Gene name | ydaO |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: ydaO | |
| MW, pI | 66 kDa, 9.929 |
| Gene length, protein length | 1821 bp, 607 aa |
| Immediate neighbours | ydaN, mutT |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
membrane proteins, proteins of unknown function
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04320
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
- Localization:
- cell membrane (according to UniProt)
Database entries
- Structure:
- UniProt: P96589
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation:
- Regulatory mechanism:
- expression is controlled via termination antitermination by the ydaO riboswitch, expression is switched off upon binding od c-di-AMP PubMed
- Additional information:
Biological materials
- Mutant:
- 1A688 (ydaO::erm), PubMed, available at BGSC
- GP93 (DydaO::cat), available in Jörg Stülke's lab
- Expression vector:
- lacZ fusion: available in Fabian Commichau's lab
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
