Difference between revisions of "YodF"
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| − | * '''Description:''' similar to | + | * '''Description:''' similar to amino acid permease <br/><br/> |
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=== Additional information=== | === Additional information=== | ||
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** in some database, the protein is annotated as being similar to proline permease, however, it is not involved in proline transport {{PubMed|24142252}} | ||
| − | * '''Protein family:''' | + | * '''Protein family:''' solute:sodium symporter family (SSS family) |
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
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* '''Mutant:''' | * '''Mutant:''' | ||
| + | ** available in [[Erhard Bremer]]'s lab {{PubMed|24142252}} | ||
* '''Expression vector:''' | * '''Expression vector:''' | ||
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=References= | =References= | ||
| − | <pubmed>12823818,,12823818,12107147 18763711, </pubmed> | + | <pubmed>12823818,,12823818,12107147 18763711, 24142252</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 12:26, 28 November 2013
- Description: similar to amino acid permease
| Gene name | yodF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yodF | |
| MW, pI | 53 kDa, 9.682 |
| Gene length, protein length | 1488 bp, 496 aa |
| Immediate neighbours | yoyD, ctpA |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
transporters/ other, putative amino acid transporter, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU19580
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- in some database, the protein is annotated as being similar to proline permease, however, it is not involved in proline transport PubMed
- Protein family: solute:sodium symporter family (SSS family)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- membrane PubMed
Database entries
- Structure:
- UniProt: O34745
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Regulation: repressed by casamino acids PubMed
- Additional information:
Biological materials
- Mutant:
- available in Erhard Bremer's lab PubMed
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Adrienne Zaprasis, Tamara Hoffmann, Lorena Stannek, Katrin Gunka, Fabian M Commichau, Erhard Bremer
The γ-aminobutyrate permease GabP serves as the third proline transporter of Bacillus subtilis.
J Bacteriol: 2014, 196(3);515-26
[PubMed:24142252]
[WorldCat.org]
[DOI]
(I p)
Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711]
[WorldCat.org]
[DOI]
(I p)
Ken-ichi Yoshida, Hirotake Yamaguchi, Masaki Kinehara, Yo-hei Ohki, Yoshiko Nakaura, Yasutaro Fujita
Identification of additional TnrA-regulated genes of Bacillus subtilis associated with a TnrA box.
Mol Microbiol: 2003, 49(1);157-65
[PubMed:12823818]
[WorldCat.org]
[DOI]
(P p)
Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147]
[WorldCat.org]
[DOI]
(P p)
