Difference between revisions of "YkoV"

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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigG regulon]]}}
+
{{SubtiWiki regulon|[[SigG regulon]]}},
 +
{{SubtiWiki regulon|[[SpoVT regulon]]}}
  
 
=The gene=
 
=The gene=
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykoV_1406357_1407292_-1 ykoV] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykoV_1406357_1407292_-1 ykoV] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigG]] {{PubMed|16497325}}
+
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|16497325}}
  
* '''Regulation:''' expressed during sporulation in the forespore ([[SigG]]) {{PubMed|16497325}}
+
* '''Regulation:''' expressed during sporulation in the forespore ([[SigG]], [[SpoVT]]) {{PubMed|16497325}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[SpoVT]]: transcription activation {{PubMed|16497325}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''
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=References=
 
=References=
  
<pubmed>16497325,, </pubmed>
+
<pubmed>16497325, 11483577, 23691176 </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 10:23, 23 May 2013

  • Description: confers dry-heat resistance to dormant spores PubMed



Gene name ykoV
Synonyms
Essential no
Product unknown
Function confers dry-heat resistance to dormant spores
Gene expression levels in SubtiExpress: ykoV
MW, pI 34 kDa, 7.213
Gene length, protein length 933 bp, 311 aa
Immediate neighbours ykoU, ykoW
Sequences Protein DNA DNA_with_flanks
Genetic context
YkoV context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkoV expression.png















Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigG regulon, SpoVT regulon

The gene

Basic information

  • Locus tag: BSU13410

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation: expressed during sporulation in the forespore (SigG, SpoVT) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Miguel de Vega
The minimal Bacillus subtilis nonhomologous end joining repair machinery.
PLoS One: 2013, 8(5);e64232
[PubMed:23691176] [WorldCat.org] [DOI] (I e)

Stephanie T Wang, Barbara Setlow, Erin M Conlon, Jessica L Lyon, Daisuke Imamura, Tsutomu Sato, Peter Setlow, Richard Losick, Patrick Eichenberger
The forespore line of gene expression in Bacillus subtilis.
J Mol Biol: 2006, 358(1);16-37
[PubMed:16497325] [WorldCat.org] [DOI] (P p)

L Aravind, E V Koonin
Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system.
Genome Res: 2001, 11(8);1365-74
[PubMed:11483577] [WorldCat.org] [DOI] (P p)