Difference between revisions of "YpsC"
| Line 27: | Line 27: | ||
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
|- | |- | ||
| − | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypsC_2330075_2331232_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:ypsC_expression.png|500px]] | + | |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ypsC_2330075_2331232_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:ypsC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22170]] |
|- | |- | ||
|} | |} | ||
Revision as of 13:43, 16 May 2013
- Description: similar to SAM-dependent 23S rRNA methyltransferase
| Gene name | ypsC |
| Synonyms | |
| Essential | no |
| Product | 23S rRNA methyltransferase |
| Function | rRNA modification |
| Gene expression levels in SubtiExpress: ypsC | |
| MW, pI | 43 kDa, 8.011 |
| Gene length, protein length | 1155 bp, 385 aa |
| Immediate neighbours | ypzG, rnpB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU22170
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- YpsC interacts with the RNA polymerase PubMed
- Localization:
Database entries
- Structure:
- UniProt: P50840
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378]
[WorldCat.org]
[DOI]
(P p)
