Difference between revisions of "YodR"

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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yodR_2143022_2143675_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yodR_expression.png|500px]]
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yodR_2143022_2143675_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yodR_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19720]]
 
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Revision as of 13:35, 16 May 2013

  • Description: similar to butyrate-acetoacetate CoA-transferase

Gene name yodR
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yodR
MW, pI 23 kDa, 6.107
Gene length, protein length 651 bp, 217 aa
Immediate neighbours yodQ, yodS
Sequences Protein DNA DNA_with_flanks
Genetic context
YodR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YodR expression.png













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Categories containing this gene/protein

sporulation proteins, poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigE regulon


The gene

Basic information

  • Locus tag: BSU19720

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Butanoyl-CoA + acetoacetate = butanoate + acetoacetyl-CoA (according to Swiss-Prot)
  • Protein family: cry6A endotoxin family (according to Swiss-Prot)
  • Paralogous protein(s): ScoB

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulation: expressed early during sporuation in the mother cell (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References