Difference between revisions of "YcdA"
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Revision as of 12:29, 16 May 2013
- Description: lipoprotein, required for swarming motility
| Gene name | ycdA |
| Synonyms | |
| Essential | no |
| Product | lipoprotein |
| Function | swarming motility |
| Gene expression levels in SubtiExpress: ycdA | |
| MW, pI | 39 kDa, 4.706 |
| Gene length, protein length | 1062 bp, 354 aa |
| Immediate neighbours | yccK, ycdB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
membrane proteins, motility and chemotaxis
This gene is a member of the following regulons
Abh regulon, AbrB regulon, DegU regulon
The gene
Basic information
- Locus tag: BSU02780
Phenotypes of a mutant
- reduced swarming motility PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34538
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: ycdA PubMed
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
- The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Mitsuo Ogura, Kensuke Tsukahara
SwrA regulates assembly of Bacillus subtilis DegU via its interaction with N-terminal domain of DegU.
J Biochem: 2012, 151(6);643-55
[PubMed:22496484]
[WorldCat.org]
[DOI]
(I p)
Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796]
[WorldCat.org]
[DOI]
(I p)
Hannes Hahne, Susanne Wolff, Michael Hecker, Dörte Becher
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches.
Proteomics: 2008, 8(19);4123-36
[PubMed:18763711]
[WorldCat.org]
[DOI]
(I p)
