Difference between revisions of "YxjJ"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pepT]]'', ''[[yxjI]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[pepT]]'', ''[[yxjI]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38930 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38930 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38930 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38930 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38930 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38930 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxjJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxjJ_context.gif]]

Revision as of 11:38, 14 May 2013

  • Description: general stress protein, survival of ethanol and salt stresses

Gene name yxjJ
Synonyms
Essential no
Product unknown
Function survival of ethanol and salt stresses
Gene expression levels in SubtiExpress: yxjJ
MW, pI 10 kDa, 8.442
Gene length, protein length 261 bp, 87 aa
Immediate neighbours pepT, yxjI
Sequences Protein DNA DNA_with_flanks
Genetic context
YxjJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YxjJ expression.png
























Categories containing this gene/protein

general stress proteins (controlled by SigB), membrane proteins

This gene is a member of the following regulons

DegU regulon, SigB regulon

The gene

Basic information

  • Locus tag: BSU38930

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization: membrane (according to Swiss-Prot)

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:
    • The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Juliane Ollinger, Kyung-Bok Song, Haike Antelmann, Michael Hecker, John D Helmann
Role of the Fur regulon in iron transport in Bacillus subtilis.
J Bacteriol: 2006, 188(10);3664-73
[PubMed:16672620] [WorldCat.org] [DOI] (P p)

Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528] [WorldCat.org] [DOI] (P p)