Difference between revisions of "CydA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cydB]]'', ''[[cimH]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cydB]]'', ''[[cimH]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38760 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38760 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38760 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38760 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38760 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38760 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:cydA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:cydA_context.gif]]

Revision as of 11:37, 14 May 2013

  • Description: cytochrome bd ubiquinol oxidase (subunit I), high affinity terminal oxidase

Gene name cydA
Synonyms yxkK
Essential no
Product cytochrome bd ubiquinol oxidase (subunit I), high affinity terminal oxidase
Function respiration
Gene expression levels in SubtiExpress: cydA
MW, pI 52 kDa, 8.935
Gene length, protein length 1404 bp, 468 aa
Immediate neighbours cydB, cimH
Sequences Protein DNA DNA_with_flanks
Genetic context
CydA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
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Categories containing this gene/protein

respiration, membrane proteins

This gene is a member of the following regulons

CcpA regulon, ResD regulon, Rex regulon

The gene

Basic information

  • Locus tag: BSU38760

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Ubiquinol-8 + O2 = Ubiquinone-8 + H2O (according to Swiss-Prot)
  • Protein family:
  • Paralogous protein(s): YthA

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s): contains an iron-sulfur cluster
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed by glucose (CcpA)
    • induced under anaerobic conditions (Rex) PubMed
    • expressed under anaerobic conditions (ResD) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References