YpsC

• Description: similar to SAM-dependent 23S rRNA methyltransferase
  
  

Gene name	ypsC
Synonyms
Essential	no
Product	23S rRNA methyltransferase
Function	rRNA modification
Gene expression levels in SubtiExpress: ypsC
MW, pI	43 kDa, 8.011
Gene length, protein length	1155 bp, 385 aa
Immediate neighbours	ypzG, rnpB
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

translation

The gene

Basic information

• Locus tag: BSU22170

Database entries

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family:

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:
  • YpsC interacts with the RNA polymerase PubMed

• Localization:

Database entries

• Structure:

• UniProt: P50840

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon:

• Expression browser: ypsC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Additional publications: PubMed

Dmitry V Lesnyak, Petr V Sergiev, Alexey A Bogdanov, Olga A Dontsova
Identification of Escherichia coli m2G methyltransferases: I. the ycbY gene encodes a methyltransferase specific for G2445 of the 23 S rRNA.
J Mol Biol: 2006, 364(1);20-5
[PubMed:17010378] [WorldCat.org] [DOI] (P p)