Difference between revisions of "YoaW"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoaV]]'', ''[[yoaZ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yoaV]]'', ''[[yoaZ]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18780 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18780 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yoaW_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yoaW_context.gif]]

Revision as of 10:23, 14 May 2013

  • Description: unknown

Gene name yoaW
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yoaW
MW, pI 16 kDa, 5.159
Gene length, protein length 429 bp, 143 aa
Immediate neighbours yoaV, yoaZ
Sequences Protein DNA DNA_with_flanks
Genetic context
YoaW context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YoaW expression.png















Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

AbrB regulon, SigE regulon

The gene

Basic information

  • Locus tag: BSU18780

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: eamA transporter family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Localization:
    • cell membrane (according to Swiss-Prot)
    • extracellular (signal peptide) PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed during logrithmic growth (AbrB) PubMed
    • expressed during sporulation in the mother cell (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Christian Degering, Thorsten Eggert, Michael Puls, Johannes Bongaerts, Stefan Evers, Karl-Heinz Maurer, Karl-Erich Jaeger
Optimization of protease secretion in Bacillus subtilis and Bacillus licheniformis by screening of homologous and heterologous signal peptides.
Appl Environ Microbiol: 2010, 76(19);6370-6
[PubMed:20709850] [WorldCat.org] [DOI] (I p)

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)

Mélanie A Hamon, Nicola R Stanley, Robert A Britton, Alan D Grossman, Beth A Lazazzera
Identification of AbrB-regulated genes involved in biofilm formation by Bacillus subtilis.
Mol Microbiol: 2004, 52(3);847-60
[PubMed:15101989] [WorldCat.org] [DOI] (P p)

P N Rather, R E Hay, G L Ray, W G Haldenwang, C P Moran
Nucleotide sequences that define promoters that are used by Bacillus subtilis sigma-29 RNA polymerase.
J Mol Biol: 1986, 192(3);557-65
[PubMed:3104598] [WorldCat.org] [DOI] (P p)