Difference between revisions of "YnzD"

From SubtiWiki
Jump to: navigation, search
Line 24: Line 24:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yneF]]'', ''[[ccdA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yneF]]'', ''[[ccdA]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17920 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17920 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17920 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17920 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ynzD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ynzD_context.gif]]

Revision as of 10:20, 14 May 2013

Gene name ynzD
Synonyms
Essential no
Product Spo0A-P phosphatase
Function control of sporulation initiation
Gene expression levels in SubtiExpress: ynzD
Function and regulation of this protein in SubtiPathways:
Phosphorelay
MW, pI 6 kDa, 6.33
Gene length, protein length 171 bp, 57 aa
Immediate neighbours yneF, ccdA
Sequences Protein DNA DNA_with_flanks
Genetic context
YnzD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YnzD expression.png















Categories containing this gene/protein

phosphorelay

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU17920

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: spo0E family (according to Swiss-Prot)
  • Paralogous protein(s): Spo0E

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

M Perego
A new family of aspartyl phosphate phosphatases targeting the sporulation transcription factor Spo0A of Bacillus subtilis.
Mol Microbiol: 2001, 42(1);133-43
[PubMed:11679073] [WorldCat.org] [DOI] (P p)

T Schiött, C von Wachenfeldt, L Hederstedt
Identification and characterization of the ccdA gene, required for cytochrome c synthesis in Bacillus subtilis.
J Bacteriol: 1997, 179(6);1962-73
[PubMed:9068642] [WorldCat.org] [DOI] (P p)