Difference between revisions of "YndF"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndE]]'', ''[[yndG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yndE]]'', ''[[yndG]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17770 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17770 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17770 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17770 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17770 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17770 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yndF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yndF_context.gif]]

Revision as of 10:20, 14 May 2013

  • Description: part of the YndD-YndE-YndF germinant receptor of unknown specificity

Gene name yndF
Synonyms
Essential no
Product part of the YndD-YndE-YndF germinant receptor
Function germination
Gene expression levels in SubtiExpress: yndF
MW, pI 44 kDa, 7.263
Gene length, protein length 1212 bp, 404 aa
Immediate neighbours yndE, yndG
Sequences Protein DNA DNA_with_flanks
Genetic context
File:YndF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YndF expression.png















Categories containing this gene/protein

germination, membrane proteins

This gene is a member of the following regulons

SigG regulon

The gene

Basic information

  • Locus tag: BSU17770

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: gerABKC lipoprotein family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Stephanie T Wang, Barbara Setlow, Erin M Conlon, Jessica L Lyon, Daisuke Imamura, Tsutomu Sato, Peter Setlow, Richard Losick, Patrick Eichenberger
The forespore line of gene expression in Bacillus subtilis.
J Mol Biol: 2006, 358(1);16-37
[PubMed:16497325] [WorldCat.org] [DOI] (P p)

Leif Steil, Mónica Serrano, Adriano O Henriques, Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis.
Microbiology (Reading): 2005, 151(Pt 2);399-420
[PubMed:15699190] [WorldCat.org] [DOI] (P p)

M Paidhungat, P Setlow
Role of ger proteins in nutrient and nonnutrient triggering of spore germination in Bacillus subtilis.
J Bacteriol: 2000, 182(9);2513-9
[PubMed:10762253] [WorldCat.org] [DOI] (P p)