Difference between revisions of "ClpY"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[clpQ]]'', ''[[codY]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[clpQ]]'', ''[[codY]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16160 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16160 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:clpY_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:clpY_context.gif]]

Revision as of 10:13, 14 May 2013

  • Description: two-component ATP-dependent protease, ATPase subunit

Gene name clpY
Synonyms hslU, codX
Essential no
Product two-component ATP-dependent protease,
ATPase subunit
Function protein degradation
Gene expression levels in SubtiExpress: clpY
Interactions involving this protein in SubtInteract: ClpY
MW, pI 52 kDa, 5.31
Gene length, protein length 1401 bp, 467 aa
Immediate neighbours clpQ, codY
Sequences Protein DNA DNA_with_flanks
Genetic context
ClpY context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
ClpY expression.png















Categories containing this gene/protein

proteolysis

This gene is a member of the following regulons

CodY regulon

The gene

Basic information

  • Locus tag: BSU16160

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: HslU subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Additional reviews: PubMed

Original publications