Difference between revisions of "YdbS"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cshA]]'', ''[[ydbT]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[cshA]]'', ''[[ydbT]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04590 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04590 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04590 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04590 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04590 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04590 DNA_with_flanks]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydbS_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ydbS_context.gif]]

Revision as of 09:31, 14 May 2013

  • Description: resistence against antimicrobial compounds from B. amyloliquefaciens

Gene name ydbS
Synonyms
Essential no
Product unknown
Function confers resistence against
antimicrobial compounds from B. amyloliquefaciens
Gene expression levels in SubtiExpress: ydbS
MW, pI 17 kDa, 8.13
Gene length, protein length 477 bp, 159 aa
Immediate neighbours cshA, ydbT
Sequences Protein DNA DNA_with_flanks
Genetic context
YdbS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdbS expression.png
























Categories containing this gene/protein

cell envelope stress proteins (controlled by SigM, V, W, X, Y), resistance against toxins/ antibiotics, membrane proteins

This gene is a member of the following regulons

SigW regulon

The gene

Basic information

  • Locus tag: BSU04590

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: UPF0699 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676] [WorldCat.org] [DOI] (P p)

Min Cao, Tao Wang, Rick Ye, John D Helmann
Antibiotics that inhibit cell wall biosynthesis induce expression of the Bacillus subtilis sigma(W) and sigma(M) regulons.
Mol Microbiol: 2002, 45(5);1267-76
[PubMed:12207695] [WorldCat.org] [DOI] (P p)

Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510] [WorldCat.org] [DOI] (P p)