Difference between revisions of "YabE"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabD]]'', ''[[rnmV]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yabD]]'', ''[[rnmV]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00400 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00400 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00400 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00400 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00400 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00400 DNA_with_flanks]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yabE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yabE_context.gif]]

Revision as of 09:09, 14 May 2013

  • Description: similar to cell wall binding protein

Gene name yabE
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yabE
MW, pI 47 kDa, 9.282
Gene length, protein length 1311 bp, 437 aa
Immediate neighbours yabD, rnmV
Sequences Protein DNA DNA_with_flanks
Genetic context
YabE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YabE expression.png
























Categories containing this gene/protein

cell wall/ other

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU00400

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains: contains a SPS domain
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information: expression is negatively controlled by a cis-acting antisense RNA that is dependent on SigX and SigM PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

John Helmann, Cornell University, USA Homepage

Your additional remarks

References

Warawan Eiamphungporn, John D Helmann
Extracytoplasmic function sigma factors regulate expression of the Bacillus subtilis yabE gene via a cis-acting antisense RNA.
J Bacteriol: 2009, 191(3);1101-5
[PubMed:19047346] [WorldCat.org] [DOI] (I p)