Difference between revisions of "Dra"
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|style="background:#ABCDEF;" align="center"|'''Function''' || utilization of nucleotides as carbon source | |style="background:#ABCDEF;" align="center"|'''Function''' || utilization of nucleotides as carbon source | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39420 dra] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/nucleosides_catabolism.html Nucleoside catabolism], [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/nucleosides_catabolism.html Nucleoside catabolism], [http://subtiwiki.uni-goettingen.de/pathways/gene_regulation_nucleotides.html Nucleotides (regulation)]''' | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nupC]]'', ''[[deoR]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nupC]]'', ''[[deoR]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39420 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:dra_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:dra_context.gif]] | ||
Revision as of 14:15, 13 May 2013
- Description: deoxyribose-phosphate aldolase
| Gene name | dra |
| Synonyms | deoC |
| Essential | no |
| Product | deoxyribose-phosphate aldolase |
| Function | utilization of nucleotides as carbon source |
| Gene expression levels in SubtiExpress: dra | |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleoside catabolism, Nucleotides (regulation) | |
| MW, pI | 22 kDa, 4.926 |
| Gene length, protein length | 633 bp, 211 aa |
| Immediate neighbours | nupC, deoR |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
| Expression at a glance PubMed 500px | |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU39420
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde (according to Swiss-Prot)
- Protein family: DeoC type 1 subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure: 1MZH (from Aquifex aeolicus, 42% identity, 62% similarity)
- UniProt: P39121
- KEGG entry: [3]
- E.C. number: 4.1.2.4
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
