Difference between revisions of "YxkO"
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|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress | |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38720 yxkO] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 5.488 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 5.488 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlA]]'', ''[[cydD]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlA]]'', ''[[cydD]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38720 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38720 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38720 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yxkO_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yxkO_context.gif]] | ||
Revision as of 14:12, 13 May 2013
- Description: ADP/ATP-dependent NAD(P)H-hydrate dehydratase, general stress protein, survival of ethanol stress
| Gene name | yxkO |
| Synonyms | |
| Essential | no |
| Product | ADP/ATP-dependent NAD(P)H-hydrate dehydratase |
| Function | survival of ethanol stress |
| Gene expression levels in SubtiExpress: yxkO | |
| MW, pI | 29 kDa, 5.488 |
| Gene length, protein length | 828 bp, 276 aa |
| Immediate neighbours | yxlA, cydD |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB)
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU38720
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure: 1KYH
- UniProt: P94368
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: yxkO PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Igor A Shumilin, Marcin Cymborowski, Olga Chertihin, Kula N Jha, John C Herr, Scott A Lesley, Andrzej Joachimiak, Wladek Minor
Identification of unknown protein function using metabolite cocktail screening.
Structure: 2012, 20(10);1715-25
[PubMed:22940582]
[WorldCat.org]
[DOI]
(I p)
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
R-g Zhang, J Grembecka, E Vinokour, F Collart, I Dementieva, W Minor, A Joachimiak
Structure of Bacillus subtilis YXKO--a member of the UPF0031 family and a putative kinase.
J Struct Biol: 2002, 139(3);161-70
[PubMed:12457846]
[WorldCat.org]
[DOI]
(P p)
Ken-Ichi Yoshida, Izumi Ishio, Eishi Nagakawa, Yoshiyuki Yamamoto, Mami Yamamoto, Yasutaro Fujita
Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome.
Microbiology (Reading): 2000, 146 ( Pt 3);573-579
[PubMed:10746760]
[WorldCat.org]
[DOI]
(P p)
