Difference between revisions of "YxlD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || negative regulation of [[SigY]]-directed transcription of the ''[[sigY]]'' operon | |style="background:#ABCDEF;" align="center"|'''Function''' || negative regulation of [[SigY]]-directed transcription of the ''[[sigY]]'' operon | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU38680 yxlD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 10.271 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 10.271 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlE]]'', ''[[yxlC]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxlE]]'', ''[[yxlC]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38680 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38680 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38680 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yxlD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yxlD_context.gif]] | ||
Revision as of 14:12, 13 May 2013
| Gene name | yxlD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | negative regulation of SigY-directed transcription of the sigY operon |
| Gene expression levels in SubtiExpress: yxlD | |
| MW, pI | 7 kDa, 10.271 |
| Gene length, protein length | 204 bp, 68 aa |
| Immediate neighbours | yxlE, yxlC |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
sigma factors and their control, cell envelope stress proteins (controlled by SigM, V, W, X, Y)
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU38680
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- UniProt: P94372
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Shigeo Tojo, Masayuki Matsunaga, Takashi Matsumoto, Choong-Min Kang, Hirotake Yamaguchi, Kei Asai, Yoshito Sadaie, Ken-ichi Yoshida, Yasutaro Fujita
Organization and expression of the Bacillus subtilis sigY operon.
J Biochem: 2003, 134(6);935-46
[PubMed:14769884]
[WorldCat.org]
[DOI]
(P p)
Min Cao, Letal Salzberg, Ching Sung Tsai, Thorsten Mascher, Carla Bonilla, Tao Wang, Rick W Ye, Leticia Márquez-Magaña, John D Helmann
Regulation of the Bacillus subtilis extracytoplasmic function protein sigma(Y) and its target promoters.
J Bacteriol: 2003, 185(16);4883-90
[PubMed:12897008]
[WorldCat.org]
[DOI]
(P p)
