Difference between revisions of "SpsF"

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|style="background:#ABCDEF;" align="center"|'''Function''' || spore coat polysaccharide synthesis
 
|style="background:#ABCDEF;" align="center"|'''Function''' || spore coat polysaccharide synthesis
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU37860 spsF]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37860 spsF]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.515   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.515   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spsG]]'', ''[[spsE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[spsG]]'', ''[[spsE]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15812&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37860 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37860 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37860 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:spsF_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:spsF_context.gif]]

Revision as of 14:08, 13 May 2013

  • Description: spore coat polysaccharide synthesis

Gene name spsF
Synonyms ipa-68d
Essential no
Product unknown
Function spore coat polysaccharide synthesis
Gene expression levels in SubtiExpress: spsF
MW, pI 27 kDa, 5.515
Gene length, protein length 717 bp, 239 aa
Immediate neighbours spsG, spsE
Sequences Protein DNA Advanced_DNA
Genetic context
SpsF context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
SpsF expression.png
























Categories containing this gene/protein

sporulation proteins

This gene is a member of the following regulons

SigK regulon

The gene

Basic information

  • Locus tag: BSU37860

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: CMP-NeuNAc synthetase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed late during sporulation in the mother cell (SigK) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Patrick Eichenberger, Masaya Fujita, Shane T Jensen, Erin M Conlon, David Z Rudner, Stephanie T Wang, Caitlin Ferguson, Koki Haga, Tsutomu Sato, Jun S Liu, Richard Losick
The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.
PLoS Biol: 2004, 2(10);e328
[PubMed:15383836] [WorldCat.org] [DOI] (I p)

E Presecan, I Moszer, L Boursier, H Cruz Ramos, V de la Fuente, M-F Hullo, C Lelong, S Schleich, A Sekowska, B H Song, G Villani, F Kunst, A Danchin, P Glaser
The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).
Microbiology (Reading): 1997, 143 ( Pt 10);3313-3328
[PubMed:9353933] [WorldCat.org] [DOI] (P p)