Difference between revisions of "YvyC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU35350 yvyC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35350 yvyC]
 
|-
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 4.698   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 4.698   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fliD]]'', ''[[hag]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fliD]]'', ''[[hag]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15552&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35350 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35350 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35350 Advanced_DNA]
 
|-
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yvyC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yvyC_context.gif]]

Revision as of 13:58, 13 May 2013

  • Description: similar to flagellar protein

Gene name yvyC
Synonyms yviH
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yvyC
MW, pI 12 kDa, 4.698
Gene length, protein length 327 bp, 109 aa
Immediate neighbours fliD, hag
Sequences Protein DNA Advanced_DNA
Genetic context
YvyC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YvyC expression.png
























Categories containing this gene/protein

motility and chemotaxis

This gene is a member of the following regulons

SigD regulon

The gene

Basic information

  • Locus tag: BSU35350

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure: 2HC5 (NMR)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Alexander Eletsky, Dinesh K Sukumaran, Rong Xiao, Thomas B Acton, Burkhard Rost, Gaetano T Montelione, Thomas Szyperski
NMR structure of protein YvyC from Bacillus subtilis reveals unexpected structural similarity between two PFAM families.
Proteins: 2009, 76(4);1037-41
[PubMed:19455708] [WorldCat.org] [DOI] (I p)

L Chen, J D Helmann
The Bacillus subtilis sigma D-dependent operon encoding the flagellar proteins FliD, FliS, and FliT.
J Bacteriol: 1994, 176(11);3093-101
[PubMed:8195064] [WorldCat.org] [DOI] (P p)