Difference between revisions of "YtrA"
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of cell envelope stress responses | |style="background:#ABCDEF;" align="center"|'''Function''' || control of cell envelope stress responses | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30460 ytrA] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]''' | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytrB]]'', ''[[ytrG]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytrB]]'', ''[[ytrG]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30460 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30460 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30460 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ytrA_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ytrA_context.gif]] | ||
Revision as of 13:40, 13 May 2013
- Description: transcriptional repressor, GntR family, control of cell envelope stress responses in response to ramoplanin
| Gene name | ytrA |
| Synonyms | |
| Essential | no |
| Product | transcriptional repressor (GntR family) |
| Function | control of cell envelope stress responses |
| Gene expression levels in SubtiExpress: ytrA | |
| Metabolic function and regulation of this protein in SubtiPathways: Central C-metabolism | |
| MW, pI | 14 kDa, 8.094 |
| Gene length, protein length | 390 bp, 130 aa |
| Immediate neighbours | ytrB, ytrG |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
| Expression at a glance PubMed 500px | |
Contents
Categories containing this gene/protein
transcription factors and their control, cold stress proteins, resistance against toxins/ antibiotics
This gene is a member of the following regulons
The YtrA regulon
The gene
Basic information
- Locus tag: BSU30460
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure: 3NEU (similar protein from Listeria innocua, 41% identity)
- UniProt: O34712
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512]
[WorldCat.org]
[DOI]
(P p)
K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249]
[WorldCat.org]
[DOI]
(P p)
