Difference between revisions of "YmfD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || iron acquisition
 
|style="background:#ABCDEF;" align="center"|'''Function''' || iron acquisition
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU16825 ymfD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16825 ymfD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 8.355   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 8.355   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ymfC]]'', ''[[ymfF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ymfC]]'', ''[[ymfF]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13555&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16825 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16825 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16825 Advanced_DNA]
 
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Revision as of 12:52, 13 May 2013

  • Description: exporter for the siderophore bacillibactin

Gene name ymfD
Synonyms
Essential no
Product bacillibactin exporter
Function iron acquisition
Gene expression levels in SubtiExpress: ymfD
MW, pI 44 kDa, 8.355
Gene length, protein length 1206 bp, 402 aa
Immediate neighbours ymfC, ymfF
Sequences Protein DNA Advanced_DNA
Genetic context
YmfD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YmfD expression.png















Categories containing this gene/protein

transporters/ other, acquisition of iron, iron metabolism, membrane proteins

This gene is a member of the following regulons

Mta regulon

The gene

Basic information

  • Locus tag: BSU16825

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: major facilitator superfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Marcus Miethke, Sarah Schmidt, Mohamed A Marahiel
The major facilitator superfamily-type transporter YmfE and the multidrug-efflux activator Mta mediate bacillibactin secretion in Bacillus subtilis.
J Bacteriol: 2008, 190(15);5143-52
[PubMed:18502870] [WorldCat.org] [DOI] (I p)