Difference between revisions of "TrmD"
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|style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | |style="background:#ABCDEF;" align="center"|'''Function''' || tRNA modification | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16030 trmD] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.309 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.309 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rimM]]'', ''[[rplS]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rimM]]'', ''[[rplS]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16030 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16030 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16030 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:trmD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:trmD_context.gif]] | ||
Revision as of 12:49, 13 May 2013
- Description: tRNA methyltransferase
| Gene name | trmD |
| Synonyms | |
| Essential | yes PubMed |
| Product | tRNA methyltransferase |
| Function | tRNA modification |
| Gene expression levels in SubtiExpress: trmD | |
| MW, pI | 27 kDa, 5.309 |
| Gene length, protein length | 729 bp, 243 aa |
| Immediate neighbours | rimM, rplS |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU16030
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing N(1)-methylguanine (according to Swiss-Prot)
- Protein family: RNA methyltransferase trmD family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cytoplasm (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31741
- KEGG entry: [2]
- E.C. number: 2.1.1.31
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
