Difference between revisions of "CatE"

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|style="background:#ABCDEF;" align="center"|'''Function''' || essential for the viability in the presence of catechol
 
|style="background:#ABCDEF;" align="center"|'''Function''' || essential for the viability in the presence of catechol
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU08240 catE]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU08240 catE]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 5.302   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 5.302   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[catD]]'', ''[[yfiF]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[catD]]'', ''[[yfiF]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12653&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08240 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08240 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08240 Advanced_DNA]
 
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Revision as of 12:22, 13 May 2013

  • Description: catechol 2,3-dioxygenase

Gene name catE
Synonyms yfiE
Essential no
Product catechol 2,3-dioxygenase
Function essential for the viability in the presence of catechol
Gene expression levels in SubtiExpress: catE
MW, pI 31 kDa, 5.302
Gene length, protein length 855 bp, 285 aa
Immediate neighbours catD, yfiF
Sequences Protein DNA Advanced_DNA
Genetic context
YfiE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
CatE expression.png
























Categories containing this gene/protein

resistance against oxidative and electrophile stress

This gene is a member of the following regulons

CatR regulon, YodB regulon

The gene

Basic information

  • Locus tag: BSU08240

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • strong induction by diamide and quinones (such as catechol) (YodB, CatR) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Bui Khanh Chi, Kazuo Kobayashi, Dirk Albrecht, Michael Hecker, Haike Antelmann
The paralogous MarR/DUF24-family repressors YodB and CatR control expression of the catechol dioxygenase CatE in Bacillus subtilis.
J Bacteriol: 2010, 192(18);4571-81
[PubMed:20639328] [WorldCat.org] [DOI] (I p)

Van Duy Nguyen, Carmen Wolf, Ulrike Mäder, Michael Lalk, Peter Langer, Ulrike Lindequist, Michael Hecker, Haike Antelmann
Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis.
Proteomics: 2007, 7(9);1391-408
[PubMed:17407181] [WorldCat.org] [DOI] (P p)

Le Thi Tam, Christine Eymann, Dirk Albrecht, Rabea Sietmann, Frieder Schauer, Michael Hecker, Haike Antelmann
Differential gene expression in response to phenol and catechol reveals different metabolic activities for the degradation of aromatic compounds in Bacillus subtilis.
Environ Microbiol: 2006, 8(8);1408-27
[PubMed:16872404] [WorldCat.org] [DOI] (P p)