Difference between revisions of "RhgR"

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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of pectin utilization
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of pectin utilization
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU07010 yesS]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07010 yesS]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YesS YesS]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YesS YesS]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesR]]'', ''[[yesT]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesR]]'', ''[[yesT]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12520&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07010 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yesS_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yesS_context.gif]]

Revision as of 12:19, 13 May 2013

  • Description: transcriptional activator (AraC family) of the rhamnogalacturonan operon

Gene name yesS
Synonyms
Essential no
Product transcriptional activator of the rhamnogalacturonan operon
Function regulation of pectin utilization
Gene expression levels in SubtiExpress: yesS
Interactions involving this protein in SubtInteract: YesS
MW, pI 87 kDa, 7.77
Gene length, protein length 2283 bp, 761 aa
Immediate neighbours yesR, yesT
Sequences Protein DNA Advanced_DNA
Genetic context
YesS context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YesS expression.png
























Categories containing this gene/protein

utilization of specific carbon sources, transcription factors and their control, membrane proteins

This gene is a member of the following regulons

YesS regulon

The YesS regulon:

The gene

Basic information

  • Locus tag: BSU07010

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains: HPr-binding domain: aa 406 - 510 PubMed
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: interaction with HPr(His)-P (occurs in the absence of preferred carbon sources) stimulates YesS activity PubMed

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulatory mechanism: YesS: transcriptional activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References