Difference between revisions of "YerD"
| Line 14: | Line 14: | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown | ||
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU06590 yerD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 58 kDa, 7.349 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 58 kDa, 7.349 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yerC]]'', ''[[pcrB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yerC]]'', ''[[pcrB]]'' | ||
|- | |- | ||
| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU06590 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU06590 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU06590 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:yerD_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:yerD_context.gif]] | ||
Revision as of 12:17, 13 May 2013
- Description: general stress protein, similar to glutamate synthase (ferredoxin)
| Gene name | yerD |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Gene expression levels in SubtiExpress: yerD | |
| MW, pI | 58 kDa, 7.349 |
| Gene length, protein length | 1575 bp, 525 aa |
| Immediate neighbours | yerC, pcrB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), poorly characterized/ putative enzymes, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU06590
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): GltA
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to UniProt)
Database entries
- Structure:
- UniProt: O34849
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant: GP1184 (tet) available in Jörg Stülke's lab
- Expression vector: pBP32 (expression vector for E. coli BL21; N-terminal Strep-tag-YerD fusion protein, based on pGP172), available in Fabian Commichau's lab
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- FLAG-tag construct: GP1187 (spc, based on pGP1331), available in Jörg Stülke's lab
- Antibody:
Labs working on this gene/protein
Fabian Commichau University of Göttingen, Germany Homepage
Your additional remarks
References
Additional publications: PubMed
