Difference between revisions of "BsdD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to salicylic acid
 
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to salicylic acid
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03651 bsdD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03651 bsdD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8.6 kDa, 5.355   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8.6 kDa, 5.355   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bsdC]]'', ''[[yclD]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bsdC]]'', ''[[yclD]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12159&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03651 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03651 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03651 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yclD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yclD_context.gif]]

Revision as of 12:08, 13 May 2013

  • Description: phenolic acid decarboxylase, reversible nonoxidative vanillate/4-hydroxybenzoate decarboxylase subunit

Gene name bsdD
Synonyms
Essential no
Product phenolic acid decarboxylase
Function resistance to salicylic acid
Gene expression levels in SubtiExpress: bsdD
MW, pI 8.6 kDa, 5.355
Gene length, protein length 225 bp, 75 aa
Immediate neighbours bsdC, yclD
Sequences Protein DNA Advanced_DNA
Genetic context
YclD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
BsdD expression.png
























Categories containing this gene/protein

resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

BsdA regulon

The gene

Basic information

  • Locus tag: BSU03651

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: induced by salicylic acid (BsdA) PubMed
  • Regulatory mechanism: BsdA: transcription activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Boguslaw Lupa, Delina Lyon, Lindsey N Shaw, Magdalena Sieprawska-Lupa, Juergen Wiegel
Properties of the reversible nonoxidative vanillate/4-hydroxybenzoate decarboxylase from Bacillus subtilis.
Can J Microbiol: 2008, 54(1);75-81
[PubMed:18388975] [WorldCat.org] [DOI] (P p)

Nguyen Van Duy, Ulrike Mäder, Ngoc Phuong Tran, Jean-François Cavin, Le Thi Tam, Dirk Albrecht, Michael Hecker, Haike Antelmann
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid.
Proteomics: 2007, 7(5);698-710
[PubMed:17295427] [WorldCat.org] [DOI] (P p)

Boguslaw Lupa, Delina Lyon, Moreland D Gibbs, Rosalind A Reeves, Juergen Wiegel
Distribution of genes encoding the microbial non-oxidative reversible hydroxyarylic acid decarboxylases/phenol carboxylases.
Genomics: 2005, 86(3);342-51
[PubMed:15979273] [WorldCat.org] [DOI] (P p)