Difference between revisions of "AmyE"
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|style="background:#ABCDEF;" align="center"|'''Function''' || starch degradation | |style="background:#ABCDEF;" align="center"|'''Function''' || starch degradation | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03040 amyE] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]''' | |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbohydrate_metabolic_pathways.html Sugar catabolism]''' | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycgB]]'', ''[[ldh]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycgB]]'', ''[[ldh]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03040 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03040 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03040 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:amyE_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:amyE_context.gif]] | ||
Revision as of 12:05, 13 May 2013
- Description: alpha-amylase
| Gene name | amyE |
| Synonyms | amyA |
| Essential | no |
| Product | alpha-amylase) |
| Function | starch degradation |
| Gene expression levels in SubtiExpress: amyE | |
| Metabolic function and regulation of this protein in SubtiPathways: Sugar catabolism | |
| MW, pI | 72 kDa, 5.85 |
| Gene length, protein length | 1980 bp, 660 aa |
| Immediate neighbours | ycgB, ldh |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU03040
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in oligosaccharides and polysaccharides (according to Swiss-Prot)
- Protein family: glycosyl hydrolase 13 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: secreted (according to Swiss-Prot), extracellular (signal peptide) PubMed
Database entries
- Structure: 1BAG (complex with maltopentaose)
- UniProt: P00691
- KEGG entry: [3]
- E.C. number: 3.2.1.1
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant: GP550 (cat), available in Stülke lab
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
