Difference between revisions of "YcdF"
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|style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress and low temperatures | |style="background:#ABCDEF;" align="center"|'''Function''' || survival of ethanol stress and low temperatures | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02830 ycdF] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.738 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 27 kDa, 5.738 | ||
| Line 22: | Line 22: | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rapJ]]'', ''[[ycdG]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rapJ]]'', ''[[ycdG]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02830 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02830 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02830 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:ycdF_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ycdF_context.gif]] | ||
Revision as of 12:04, 13 May 2013
- Description: general stress protein, similar to glucose 1-dehydrogenase, survival of ethanol stress and low temperatures
| Gene name | ycdF |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | survival of ethanol stress and low temperatures |
| Gene expression levels in SubtiExpress: ycdF | |
| MW, pI | 27 kDa, 5.738 |
| Gene length, protein length | 774 bp, 258 aa |
| Immediate neighbours | rapJ, ycdG |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
general stress proteins (controlled by SigB), poorly characterized/ putative enzymes
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02830
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Beta-D-glucose + NAD(P)+ = D-glucono-1,5-lactone + NAD(P)H (according to Swiss-Prot)
- Protein family: short-chain dehydrogenases/reductases (SDR) family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P80869
- KEGG entry: [2]
- E.C. number: 1.1.1.47
Additional information
Expression and regulation
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166]
[WorldCat.org]
[DOI]
(P p)
