Difference between revisions of "YcbF"
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|style="background:#ABCDEF;" align="center"|'''Function''' || glucarate utilization | |style="background:#ABCDEF;" align="center"|'''Function''' || glucarate utilization | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02490 ycbF] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 50 kDa, 5.594 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 50 kDa, 5.594 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycbE]]'', ''[[ycbG]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycbE]]'', ''[[ycbG]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02490 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02490 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02490 Advanced_DNA] |
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Revision as of 12:03, 13 May 2013
- Description: glucarate dehydratase
| Gene name | ycbF |
| Synonyms | gudD |
| Essential | no |
| Product | glucarate dehydratase |
| Function | glucarate utilization |
| Gene expression levels in SubtiExpress: ycbF | |
| MW, pI | 50 kDa, 5.594 |
| Gene length, protein length | 1365 bp, 455 aa |
| Immediate neighbours | ycbE, ycbG |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
utilization of specific carbon sources
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU02490
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: d-glucarate = 5-dehydro-4-deoxy-D-glucarate + H2O (according to Swiss-Prot)
- Protein family: GlucD subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P42238
- KEGG entry: [3]
- E.C. number: 4.2.1.40
Additional information
Expression and regulation
- Sigma factor:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
