Difference between revisions of "RpoE"
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| − | * '''Description:''' [[RNA polymerase]] delta subunit <br/><br/> | + | * '''Description:''' [[RNA polymerase]] delta subunit, affects the regulation of [[RNA polymerase]] by the concentration of the initiating nucleoside triphosphate ([iNTP]) <br/><br/> |
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpoE_3812542_3813063_-1 rpoE] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpoE_3812542_3813063_-1 rpoE] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
** ''[[fadF]]'': [[SigA]] {{PubMed|17189250}} | ** ''[[fadF]]'': [[SigA]] {{PubMed|17189250}} | ||
** ''[[rpoE]]'': [[SigA]] {{PubMed|10336502}} | ** ''[[rpoE]]'': [[SigA]] {{PubMed|10336502}} | ||
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<pubmed> 22210308 </pubmed> | <pubmed> 22210308 </pubmed> | ||
==Original publications== | ==Original publications== | ||
| − | + | <pubmed>7545758,7599136,7515111,10336502,2843435,17189250, ,3097010 6788769 23543716 22350953,20890634, 20724389,20310067, 21424579</pubmed> | |
| − | <pubmed>7545758,7599136,7515111,10336502,2843435,17189250, ,3097010 6788769 </pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 15:20, 2 April 2013
- Description: RNA polymerase delta subunit, affects the regulation of RNA polymerase by the concentration of the initiating nucleoside triphosphate ([iNTP])
| Gene name | rpoE |
| Synonyms | |
| Essential | no |
| Product | RNA polymerase delta subunit |
| Function | transcription |
| Gene expression levels in SubtiExpress: rpoE | |
| Interactions involving this protein in SubtInteract: RpoE | |
| Metabolic function and regulation of this protein in SubtiPathways: Fatty acid degradation | |
| MW, pI | 20 kDa, 3.654 |
| Gene length, protein length | 519 bp, 173 aa |
| Immediate neighbours | pyrG, acdA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU37160
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: rpoE family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- closely associated to RNA polymerase (RpoA(2)-RpoB-RpoC) PubMed
- Localization:closely associated with RNA polymerase involved in transcribing both mRNA and rRNA operons PubMed
Database entries
- UniProt: P12464
- KEGG entry: [3]
- E.C. number: 2.7.7.6
Additional information
Expression and regulation
- Additional information:
- present at equimolar levels with RNA polymerase PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Arthur Aronson, Purdue University, West Lafayette, USA homepage
Your additional remarks
References
Reviews
Lakshminarayan M Iyer, L Aravind
Insights from the architecture of the bacterial transcription apparatus.
J Struct Biol: 2012, 179(3);299-319
[PubMed:22210308]
[WorldCat.org]
[DOI]
(I p)
Original publications
