Difference between revisions of "YloH"

From SubtiWiki
Jump to: navigation, search
Line 39: Line 39:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
+
<br/><br/>
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
Line 88: Line 88:
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:''' closely associated to [[RNA polymerase]] ([[RpoA]](2)-[[RpoB]]-[[RpoC]]) {{PubMed|20724389}}  
+
* '''[[SubtInteract|Interactions]]:'''
 +
** closely associated to [[RNA polymerase]] ([[RpoA]](2)-[[RpoB]]-[[RpoC]]) {{PubMed|20724389}}  
  
* '''Localization:'''closely associated with [[RNA polymerase]] involved in transcribing both mRNA and rRNA operons {{PubMed|20724389}}
+
* '''[[Localization]]:'''
 +
** closely associated with [[RNA polymerase]] involved in transcribing both mRNA and rRNA operons {{PubMed|20724389}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 110: Line 112:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpoZ_1642567_1642770_1 yloH] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpoZ_1642567_1642770_1 yloH] {{PubMed|22383849}}
  
* '''Sigma factor:'''  
+
* '''[[Sigma factor]]:'''  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  

Revision as of 20:13, 28 November 2012

Gene name yloH
Synonyms
Essential no
Product omega subunit of RNA polymerase
Function unknown
Gene expression levels in SubtiExpress: yloH
Interactions involving this protein in SubtInteract: YloH
Metabolic function and regulation of this protein in SubtiPathways:
Nucleotides (regulation)
MW, pI 7 kDa, 5.513
Gene length, protein length 201 bp, 67 aa
Immediate neighbours gmk, yloI
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YloH context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YloH expression.png















Categories containing this gene/protein

transcription

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU15690

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1) (according to Swiss-Prot)
  • Protein family: RNA polymerase subunit omega family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Reviews

Lakshminarayan M Iyer, L Aravind
Insights from the architecture of the bacterial transcription apparatus.
J Struct Biol: 2012, 179(3);299-319
[PubMed:22210308] [WorldCat.org] [DOI] (I p)

Original publications

Additional publications: PubMed