Difference between revisions of "YkuO"

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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
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* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:'''
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* '''[[SubtInteract|Interactions]]:'''
  
* '''Localization:'''
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* '''[[Localization]]:'''
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykuO_1487504_1488397_1 ykuO] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ykuO_1487504_1488397_1 ykuO] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigA]] {{PubMed|12354229}}  
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* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|12354229}}  
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
** repressed unless the cells enter an iron starvation ([[Fur]]) {{PubMed|12354229}}  
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** induced upon iron starvation ([[Fur]]) {{PubMed|12354229}}  
 
** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
 
** repressed by casamino acids [http://www.ncbi.nlm.nih.gov/pubmed/12107147 PubMed]
  

Revision as of 19:50, 3 November 2012

  • Description: unknown

Gene name ykuO
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ykuO
Metabolic function and regulation of this protein in SubtiPathways:
Lys, Thr
MW, pI 33 kDa, 8.128
Gene length, protein length 891 bp, 297 aa
Immediate neighbours ykuN, ykuP
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YkuO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkuO expression.png















Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

Fur regulon

The gene

Basic information

  • Locus tag: BSU14160

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced upon iron starvation (Fur) PubMed
    • repressed by casamino acids PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References