Difference between revisions of "YfkC"

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(Extended information on the protein)
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 840 bp, 280 aa  
 
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 840 bp, 280 aa  
 
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfkD]]'', ''[[yfkB]]''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfkD]]'', ''[[yfkA]]''
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12623&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12623&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''[[yfkA]]-[[yfkB]]-[[yfkC]]'' (according to [http://dbtbs.hgc.jp/COG/prom/yfkABC.html DBTBS])
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* '''Operon:''' ''[[yfkA]]-[[yfkC]]'' {{PubMed|22383849}}
  
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfkC_867164_868006_-1 yfkC] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yfkC_867164_868006_-1 yfkC] {{PubMed|22383849}}
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<pubmed>12626684 ,, </pubmed>
 
<pubmed>12626684 ,, </pubmed>
 
==Original Publications==
 
==Original Publications==
<pubmed>17665170,18310427,19252899,, </pubmed>
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<pubmed>17665170,18310427,19252899,22383849, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 17:49, 12 August 2012

Gene name yfkC
Synonyms
Essential no
Product mechanosensitive channel, similar to MscS
Function resistance to osmotic downshock
Gene expression levels in SubtiExpress: yfkC
Metabolic function and regulation of this protein in SubtiPathways:
Stress
MW, pI 32 kDa, 5.293
Gene length, protein length 840 bp, 280 aa
Immediate neighbours yfkD, yfkA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YfkC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfkC expression.png



















Categories containing this gene/protein

coping with hypo-osmotic stress, membrane proteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU07940

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Erhard Bremer, University of Marburg, Germany homepage

Your additional remarks

References

Reviews

Christopher D Pivetti, Ming-Ren Yen, Samantha Miller, Wolfgang Busch, Yi-Hsiung Tseng, Ian R Booth, Milton H Saier
Two families of mechanosensitive channel proteins.
Microbiol Mol Biol Rev: 2003, 67(1);66-85, table of contents
[PubMed:12626684] [WorldCat.org] [DOI] (P p)

Original Publications