Difference between revisions of "YkfC"

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* '''Description:''' D-glutamyl-L-amino acid peptidase <br/><br/>
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|style="background:#ABCDEF;" align="center"|'''Function''' || cell wall metabolism
 
|style="background:#ABCDEF;" align="center"|'''Function''' || cell wall metabolism
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU12990 ykfC]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 6.346   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 32 kDa, 6.346   

Revision as of 08:15, 7 August 2012


Gene name ykfC
Synonyms
Essential no
Product D-glutamyl-L-amino acid peptidase
Function cell wall metabolism
Gene expression levels in SubtiExpress: ykfC
MW, pI 32 kDa, 6.346
Gene length, protein length 888 bp, 296 aa
Immediate neighbours ykfB, ykfD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YkfC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YkfC expression.png


























Categories containing this gene/protein

cell wall/ other

This gene is a member of the following regulons

CodY regulon

The gene

Basic information

  • Locus tag: BSU12990

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: cleaves L-Ala-γ-D-Glu dipeptides from cell wall peptides PubMed
  • Protein family: nlpC/p60 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulatory mechanism: CodY: transcription repression PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Virginie Molle, Yoshiko Nakaura, Robert P Shivers, Hirotake Yamaguchi, Richard Losick, Yasutaro Fujita, Abraham L Sonenshein
Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis.
J Bacteriol: 2003, 185(6);1911-22
[PubMed:12618455] [WorldCat.org] [DOI] (P p)

All publications: PubMed