Difference between revisions of "RrnB-16S"

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(References)
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=== Additional information===
 
=== Additional information===
 
  
  
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''rrnB''  [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
+
* '''Operon:'''  
 +
** ''[[rrnB-16S]]-[[rrnB-23S]]- [[rrnB-5S]]-[[trnB-Val]]-[[trnB-Thr]]-[[trnB-Lys]]-[[trnB-Leu1]]-[[trnB-Leu2]]-[[trnB-Gly1]]-[[trnB-Arg]]-[[trnB-Pro]]-[[trnB-Ala]]-[[trnB-Met1]]-[[trnB-Met3]]-[[trnB-Ser1]]-[[trnB-Met2]]-[[trnB-Asp]]-[[trnB-Phe]]-[[trnB-His]]-[[trnB-Gly2]]-[[trnB-Ile2]]-[[trnB-Asn]]-[[trnB-Ser2]]-[[trnB-Glu]]''  {{PubMed|2414156}}
  
 
* '''Sigma factor:'''  
 
* '''Sigma factor:'''  

Revision as of 09:10, 2 August 2012

Gene name rrnB-16S
Synonyms
Essential no
Product ribosomal RNA-16S
Function translation
Gene length 1550 bp
Immediate neighbours rrnB-23S, thiT
Gene sequence (+200bp)
Genetic context
RrnB-16S context.gif
This image was kindly provided by SubtiList








Categories containing this gene/protein

translation

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]
  • Structure:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: Passive transcriptional regulation by cellular GTP concentration
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:

Labs working on this gene/RNA

Your additional remarks

References

Additional publications: PubMed

Hideaki Nanamiya, Makiko Sato, Kenta Masuda, Mikiko Sato, Tetsuya Wada, Shota Suzuki, Yousuke Natori, Masato Katano, Genki Akanuma, Fujio Kawamura
Bacillus subtilis mutants harbouring a single copy of the rRNA operon exhibit severe defects in growth and sporulation.
Microbiology (Reading): 2010, 156(Pt 10);2944-2952
[PubMed:20634236] [WorldCat.org] [DOI] (I p)

Yousuke Natori, Kazumi Tagami, Kana Murakami, Sawako Yoshida, Osamu Tanigawa, Yoonsuh Moh, Kenta Masuda, Tetsuya Wada, Shota Suzuki, Hideaki Nanamiya, Yuzuru Tozawa, Fujio Kawamura
Transcription activity of individual rrn operons in Bacillus subtilis mutants deficient in (p)ppGpp synthetase genes, relA, yjbM, and ywaC.
J Bacteriol: 2009, 191(14);4555-61
[PubMed:19447912] [WorldCat.org] [DOI] (I p)

Libor Krásný, Richard L Gourse
An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation.
EMBO J: 2004, 23(22);4473-83
[PubMed:15496987] [WorldCat.org] [DOI] (P p)

C J Green, G C Stewart, M A Hollis, B S Vold, K F Bott
Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB.
Gene: 1985, 37(1-3);261-6
[PubMed:2414156] [WorldCat.org] [DOI] (P p)