Difference between revisions of "YqiI"
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| + | ** cell wall hydrolysis {{PubMed|22843846}} | ||
* '''Protein family:''' N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot) | * '''Protein family:''' N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot) | ||
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* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
| + | ** secreted (with N-terminal signal sequence for SEC-mediated transport) {{PubMed|22843846}} | ||
=== Database entries === | === Database entries === | ||
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[yqiH]]-[[yqiI]]-[[yqiK]]'' {{PubMed|22383849}} | + | * '''Operon:''' ''[[yqiH]]-[[yqiI]]-[[yqiK]]'' {{PubMed|22843846,22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqiI_2514979_2515599_-1 yqiI] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yqiI_2514979_2515599_-1 yqiI] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] {{PubMed|22843846}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** only expressed under conditions of high osmolarity {{PubMed|22843846}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
Revision as of 10:36, 31 July 2012
- Description: secreted N-acetylmuramoyl-L-alanine amidase
| Gene name | yqiI |
| Synonyms | |
| Essential | no |
| Product | peptidoglycan hydrolase |
| Function | cell wall metabolism |
| MW, pI | 22 kDa, 4.286 |
| Gene length, protein length | 618 bp, 206 aa |
| Immediate neighbours | yqiK, yqiH |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
cell wall degradation/ turnover
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU24190
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- cell wall hydrolysis PubMed
- Protein family: N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- secreted (with N-terminal signal sequence for SEC-mediated transport) PubMed
Database entries
- Structure:
- UniProt: P54525
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- only expressed under conditions of high osmolarity PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Kathleen E Fischer, Erhard Bremer
Activity of the osmotically regulated yqiHIK promoter from Bacillus subtilis is controlled at a distance.
J Bacteriol: 2012, 194(19);5197-208
[PubMed:22843846]
[WorldCat.org]
[DOI]
(I p)
Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849]
[WorldCat.org]
[DOI]
(I p)
