Difference between revisions of "YbxF"
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* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | ** binds K-turns in [[RNA switch]]es as | + | ** binds K-turns in [[RNA switch]]es as they occur in the [[L-box]], the [[S-box]] and the [[T-box]] {{PubMed|22355167}} |
* '''Protein family:''' [[ribosomal protein]] L7Ae family (according to Swiss-Prot) | * '''Protein family:''' [[ribosomal protein]] L7Ae family (according to Swiss-Prot) | ||
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=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?structureId= | + | * '''Structure:''' [http://www.rcsb.org/pdb/explore/explore.do?structureId=3V7 3V7] ([[YbxF]] bound to the [[S-box|SAM-I riboswitch]] aptamer) {{PubMed|22355167}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/P46350 P46350] | * '''UniProt:''' [http://www.uniprot.org/uniprot/P46350 P46350] | ||
Revision as of 17:36, 4 May 2012
- Description: highly expressed protein, similar to ribosomal protein L7AE family, associated with the ribosome during exponential growth, binds K-turns in RNA switches
| Gene name | ybxF |
| Synonyms | ybaB |
| Essential | no |
| Product | unknown |
| Function | unknown |
| Interactions involving this protein in SubtInteract: YbxF | |
| MW, pI | 8 kDa, 9.511 |
| Gene length, protein length | 246 bp, 82 aa |
| Immediate neighbours | rpoC, rpsL |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
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Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU01090
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- binds K-turns in RNA switches as they occur in the L-box, the S-box and the T-box PubMed
- Protein family: ribosomal protein L7Ae family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cytoplasm (according to Swiss-Prot)
Database entries
- Structure: 3V7 (YbxF bound to the SAM-I riboswitch aptamer) PubMed
- UniProt: P46350
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Additional publications: PubMed
Christine Eymann, Georg Homuth, Christian Scharf, Michael Hecker
Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.
J Bacteriol: 2002, 184(9);2500-20
[PubMed:11948165]
[WorldCat.org]
[DOI]
(P p)
