Difference between revisions of "YtrD"

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Revision as of 11:31, 20 April 2012

  • Description: ABC transporter (hydrophobic protein, probably channel protein)

Gene name ytrD
Synonyms
Essential no
Product ABC transporter
(hydrophobic protein, probably channel protein)
Function unknown
Interactions involving this protein in SubtInteract: YtrD
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism
MW, pI 36 kDa, 9.094
Gene length, protein length 975 bp, 325 aa
Immediate neighbours ytrE, ytrC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YtrD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YtrD expression.png




























Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

  • Locus tag: BSU30430

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ABC-5 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s): YtrC

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by ramoplanin (YtrA) PubMed
    • expressed early in the stationary phase PubMed
    • induced by cold shock (5-fold) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Carsten L Beckering, Leif Steil, Michael H W Weber, Uwe Völker, Mohamed A Marahiel
Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis.
J Bacteriol: 2002, 184(22);6395-402
[PubMed:12399512] [WorldCat.org] [DOI] (P p)

K I Yoshida, Y Fujita, S D Ehrlich
An operon for a putative ATP-binding cassette transport system involved in acetoin utilization of Bacillus subtilis.
J Bacteriol: 2000, 182(19);5454-61
[PubMed:10986249] [WorldCat.org] [DOI] (P p)

Y Quentin, G Fichant, F Denizot
Inventory, assembly and analysis of Bacillus subtilis ABC transport systems.
J Mol Biol: 1999, 287(3);467-84
[PubMed:10092453] [WorldCat.org] [DOI] (P p)