Difference between revisions of "YrvJ"

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|colspan="2" | '''Genetic context''' <br/> [[Image:yrvJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yrvJ_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yrvJ_2818494_2820050_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yrvJ_expression.png|500px]]
 
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Revision as of 09:58, 20 April 2012

  • Description: similar to N-acetylmuramoyl-L-alanine amidase

Gene name yrvJ
Synonyms
Essential no
Product peptidoglycan hydrolase
Function cell wall metabolism
MW, pI 55 kDa, 5.192
Gene length, protein length 1554 bp, 518 aa
Immediate neighbours yrzK, yrvI
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YrvJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YrvJ expression.png
























Categories containing this gene/protein

cell wall/ other

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU27580

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides (according to Swiss-Prot)
  • Protein family: N-acetylmuramoyl-L-alanine amidase 3 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References