Difference between revisions of "YodR"

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|colspan="2" | '''Genetic context''' <br/> [[Image:yodR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yodR_context.gif]]
 
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yodR_2143022_2143675_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yodR_expression.png|500px]]
 
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Revision as of 11:11, 19 April 2012

  • Description: similar to butyrate-acetoacetate CoA-transferase

Gene name yodR
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 23 kDa, 6.107
Gene length, protein length 651 bp, 217 aa
Immediate neighbours yodQ, yodS
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YodR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YodR expression.png
























Categories containing this gene/protein

sporulation proteins, poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigE regulon


The gene

Basic information

  • Locus tag: BSU19720

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Butanoyl-CoA + acetoacetate = butanoate + acetoacetyl-CoA (according to Swiss-Prot)
  • Protein family: cry6A endotoxin family (according to Swiss-Prot)
  • Paralogous protein(s): ScoB

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulation: expressed early during sporuation in the mother cell (SigE) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Andrea Feucht, Louise Evans, Jeff Errington
Identification of sporulation genes by genome-wide analysis of the sigmaE regulon of Bacillus subtilis.
Microbiology (Reading): 2003, 149(Pt 10);3023-3034
[PubMed:14523133] [WorldCat.org] [DOI] (P p)